MarcAntoine Robert asked 1 year ago

Has anyone managed to use BRASS on HPC compute nodes to detect and identify somatic variants. (see link below)

1 Answers
flefebvre Staff answered 1 year ago

Hi Marc-Antoine, a member of our team recommends having a look at SvABA as an alternative
It is already installed in the MUGQIC stack on cedar, guillimin, mp2 and others:

Cvmfs Modules_beta2

The same person also reports tools from this github user to be a nightmare to install with many dependencies. 
If installation is your problem you may want to try your luck with Compute Canada at (official cvmfs software stack) or C3G at (mugqic cvmfs stack)