Has anyone managed to use BRASS on HPC compute nodes to detect and identify somatic variants. (see link below)
Hi Marc-Antoine, a member of our team recommends having a look at SvABA as an alternative
It is already installed in the MUGQIC stack on cedar, guillimin, mp2 and others:
The same person also reports tools from this github user to be a nightmare to install with many dependencies.
If installation is your problem you may want to try your luck with Compute Canada at email@example.com (official cvmfs software stack) or C3G at firstname.lastname@example.org (mugqic cvmfs stack)