FORUMpicard RIBOSOMAL_INTERVALS file – shared use
Brian McConeghy asked 2 months ago



  • Hi there,
    Does a RIBOSOMAL_INTERVALS file exist for Homo sapiens Ensembl build 87 exist on Cedar? If not, could you please create the necessary RIBOSOMAL_INTERVALS file for Picard’s CollectRnaSeqMetrics command for Homo sapiens Ensembl87 and store it in a universally accessible location? Probably under /cvmfs/ref.mugqic/genomes/species/Homo_sapiens.GRCh38/annotations/ ? I can create it myself, but I figure it could be useful for others as well.
    Thanks,
    Brian

    1 Answers
    Best Answer
    flefebvre Staff answered 2 months ago



  • Hi Brian, we forwarded your request to the C3G team who maintain the mugqic cvmfs. Here is the reply:
     

    Hi,
    I just generated the file and transferd it on CVMFS :
    /cvmfs/ref.mugqic/genomes/species/Homo_sapiens.GRCh38/annotations/ Homo_sapiens.GRCh38.Ensembl87.rrna.interval_list
    Best,
    Edouard

     
    If you have more questions about this you can email them directly at pipelines@computationalgenomics.ca
     
    best regards.