I finished running Maker for annotation and want to change the IDs. I am using the command
$ module load nixpkgs/16.09 gcc/5.4.0 openmpi/2.1.1 maker/2.31.9
$ maker_map_ids –prefix BMM1_ –justify 8 Maker_GFF.all.gff > Maker_GFF.all.id.map
This gives me a empty file ‘ Maker_GFF.all.id.map’
The file ‘Maker_GFF.all.gff’ was produced at the end of Maker using ‘gff3_merge’ so the format should be correct.
Hope someone can help me with this!
Were you able to figure out the problem yet?
My inclination is to think there is in fact an issue with the input file… i.e. some kind of formatting problem. Even if it was produced by gff3_merge, it’s still a possibility.
Perhaps you could try running one of the input files prior to merging to see if that gives some output?