I am totally new to CC and also to bioinformatics. I’m a software developer and starting to learn bioinformatics. I have played with QIIME2 on a VM on my personal computer to learn the basics. Currently, I have a job that has been running for the last 7 days which is the reason why I opened a CC account.
Now I’m trying to install QIIME2 on the Graham node, but I get an invalid syntax error when trying to pip install.
Here are the steps I have done :
- loaded the python/3.7 module ok
- created my virtual env ok
- activated my virtual env ok
- pip upgrade ok
- installed numpy ok
- Trying to install QIIME not ok!
- command pip install qiime
Am I missing something?
I believe there might be an issue with trying to install within a conda environment on the system.
But for this, I would recommend enlisting the help of the Compute Canada support team. I believe they’ve dealt with this issue before and can help get you sorted.
I will submit a ticket on your behalf to firstname.lastname@example.org and you should get a response fairly soon.