FORUM › Catégorie: Bioinformatics › How to get coverage from a bam file? 0 Votez pour Votez contre jrosner personnel demandée il y a 4 ans Report Inappropriate Issue: * Spam Inappropriate content Your Name: * Your Email: * Details: * Report Inappropriate I have a set of bam files for which I need to calculate coverage as a whole and also over specific regions. What would be the method to do this? Or better yet is there a software tool that will do this for me? Tags de question: bam, coverage 1 Réponses 0 Votez pour Votez contre zhibin personnel répondue il y a 4 ans Report Inappropriate Issue: * Spam Inappropriate content Your Name: * Your Email: * Details: * Report Inappropriate Usually, I run bamqc in QualiMap (http://qualimap.bioinfo.cipf.es/) after I generate bam files. The tool gives you not only the coverage but all sorts of QC of your bam file.