FORUMError when running tRNA-SE
sjossey asked 2 weeks ago



Hi,
I am getting the following error while running tRNAscan
$ tRNAscan-SE test.fasta > test.tRNA.fasta
FATAL: Unable to find /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/gcc5.4/trnascan-se/2.0.0/bin/cmsearch executable
Thanks,
Sushma

1 Answers
jrosner Staff answered 2 weeks ago



Hi Sushma,
best guess is that it’s an issue with the tool setup, in order to troubleshoot I recommend you submit a ticket to support@computecanada.ca
this will go directly to Compute Canada systems administrators who can help you rectify the issue.
Cheers,
Jamie